PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G087600.1
Common NameB456_008G087600, LOC105763496
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 314aa    MW: 35638.4 Da    PI: 6.2447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G087600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.2e-12135181455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          h  +Er+RR+++ ++f  L  l+P +     kK +Ka+iL  A+ Y+k+Lq
  Gorai.008G087600.1 135 DHVLAERKRREKLSQSFISLSALIPGL-----KKTDKASILGDAITYLKKLQ 181
                         58899**********************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.951131180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16135193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-16136197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.19E-12136184No hitNo description
PfamPF000101.2E-9136181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-13137186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEIASGKWLS QLEMEDPTLF PQYQMINPID YSFHDFNFHS ENYSSNPYYT IGNSFIETSQ  60
EVDDFKRQMK QLKTNSWNSC ITENNIPPPP KPSSSSSSSH LISFDNSNSY YAVDYDVKPK  120
NEVGSFTRIP LHAQDHVLAE RKRREKLSQS FISLSALIPG LKKTDKASIL GDAITYLKKL  180
QDRVNVLEEQ VAKKTMESVI FVRKTQIYAD DETSSSDESV HGQSNNNPFP EIEARVSDKD  240
VLIRIHCKNN KGCISNIINE VEKLHLFVLN SHVLPFGQAT LDITITAQME AEFSMTVKDL  300
VKSLRLALLK FIM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144ERKRRE
2140145RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012437188.10.0PREDICTED: transcription factor bHLH19-like
TrEMBLA0A0D2PRC40.0A0A0D2PRC4_G
STRINGVIT_03s0088g01240.t014e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.15e-64bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]